Merge pull request #13 from zjukg/master

update README.md

README.md

@@ -13,7 +13,13 @@
 
 
 ## 🔬 Dependencies
-Our code is developed based on [alpaca-lora](https://github.com/tloen/alpaca-lora). Please build the Python environment following the instruction in Alpaca-lora.
+Our code is developed based on [alpaca-lora](https://github.com/tloen/alpaca-lora). Please build the Python following the instruction in Alpaca-lora.
+
+Some core python library config: 
+- Python 3.9.16
+- torch 2.0.0
+- transformers 4.28.0
+- peft 0.3.0
 
 ## 📕 Training & Test
 
@@ -26,7 +32,7 @@ CUDA_VISIBLE_DEVICES=0 nohup python finetune_kopa.py \
     --data_path 'data/UMLS-train.json' \
     --output_dir 'YOUR SAVE PATH' \
     --num_epochs 3 \
-    --lora_r 32 \
+    --lora_r 64 \
     --learning_rate 3e-4 \
     --batch_size 12 \
     --micro_batch_size 12 \

data/kg/CoDeX-S/1-1.txt

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data/kg/CoDeX-S/1-n.txt

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data/kg/CoDeX-S/n-1.txt

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data/kg/CoDeX-S/relation2id.txt

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data/kg/FB15K-237N/TRANSE-FB15K-237N-DIM256+BATCH1024+NEG32-MARGIN12.txt

@@ -0,0 +1 @@
+python: can't open file 'run_base.py': [Errno 2] No such file or directory

data/kg/FB15K-237N/n-n.py

@@ -0,0 +1,154 @@
+lef = {}
+rig = {}
+rellef = {}
+relrig = {}
+
+triple = open("train2id.txt", "r")
+valid = open("valid2id.txt", "r")
+test = open("test2id.txt", "r")
+
+tot = (int)(triple.readline())
+for i in range(tot):
+	content = triple.readline()
+	h,t,r = content.strip().split()
+	if not (h,r) in lef:
+		lef[(h,r)] = []
+	if not (r,t) in rig:
+		rig[(r,t)] = []
+	lef[(h,r)].append(t)
+	rig[(r,t)].append(h)
+	if not r in rellef:
+		rellef[r] = {}
+	if not r in relrig:
+		relrig[r] = {}
+	rellef[r][h] = 1
+	relrig[r][t] = 1
+
+tot = (int)(valid.readline())
+for i in range(tot):
+	content = valid.readline()
+	h,t,r = content.strip().split()
+	if not (h,r) in lef:
+		lef[(h,r)] = []
+	if not (r,t) in rig:
+		rig[(r,t)] = []
+	lef[(h,r)].append(t)
+	rig[(r,t)].append(h)
+	if not r in rellef:
+		rellef[r] = {}
+	if not r in relrig:
+		relrig[r] = {}
+	rellef[r][h] = 1
+	relrig[r][t] = 1
+
+tot = (int)(test.readline())
+for i in range(tot):
+	content = test.readline()
+	h,t,r = content.strip().split()
+	if not (h,r) in lef:
+		lef[(h,r)] = []
+	if not (r,t) in rig:
+		rig[(r,t)] = []
+	lef[(h,r)].append(t)
+	rig[(r,t)].append(h)
+	if not r in rellef:
+		rellef[r] = {}
+	if not r in relrig:
+		relrig[r] = {}
+	rellef[r][h] = 1
+	relrig[r][t] = 1
+
+test.close()
+valid.close()
+triple.close()
+
+f = open("type_constrain.txt", "w")
+f.write("%d\n"%(len(rellef)))
+for i in rellef:
+	f.write("%s\t%d"%(i,len(rellef[i])))
+	for j in rellef[i]:
+		f.write("\t%s"%(j))
+	f.write("\n")
+	f.write("%s\t%d"%(i,len(relrig[i])))
+	for j in relrig[i]:
+		f.write("\t%s"%(j))
+	f.write("\n")
+f.close()
+
+rellef = {}
+totlef = {}
+relrig = {}
+totrig = {}
+# lef: (h, r)
+# rig: (r, t)
+for i in lef:
+	if not i[1] in rellef:
+		rellef[i[1]] = 0
+		totlef[i[1]] = 0
+	rellef[i[1]] += len(lef[i])
+	totlef[i[1]] += 1.0
+
+for i in rig:
+	if not i[0] in relrig:
+		relrig[i[0]] = 0
+		totrig[i[0]] = 0
+	relrig[i[0]] += len(rig[i])
+	totrig[i[0]] += 1.0
+
+s11=0
+s1n=0
+sn1=0
+snn=0
+f = open("test2id.txt", "r")
+tot = (int)(f.readline())
+for i in range(tot):
+	content = f.readline()
+	h,t,r = content.strip().split()
+	rign = rellef[r] / totlef[r]
+	lefn = relrig[r] / totrig[r]
+	if (rign < 1.5 and lefn < 1.5):
+		s11+=1
+	if (rign >= 1.5 and lefn < 1.5):
+		s1n+=1
+	if (rign < 1.5 and lefn >= 1.5):
+		sn1+=1
+	if (rign >= 1.5 and lefn >= 1.5):
+		snn+=1
+f.close()
+
+
+f = open("test2id.txt", "r")
+f11 = open("1-1.txt", "w")
+f1n = open("1-n.txt", "w")
+fn1 = open("n-1.txt", "w")
+fnn = open("n-n.txt", "w")
+fall = open("test2id_all.txt", "w")
+tot = (int)(f.readline())
+fall.write("%d\n"%(tot))
+f11.write("%d\n"%(s11))
+f1n.write("%d\n"%(s1n))
+fn1.write("%d\n"%(sn1))
+fnn.write("%d\n"%(snn))
+for i in range(tot):
+	content = f.readline()
+	h,t,r = content.strip().split()
+	rign = rellef[r] / totlef[r]
+	lefn = relrig[r] / totrig[r]
+	if (rign < 1.5 and lefn < 1.5):
+		f11.write(content)
+		fall.write("0"+"\t"+content)
+	if (rign >= 1.5 and lefn < 1.5):
+		f1n.write(content)
+		fall.write("1"+"\t"+content)
+	if (rign < 1.5 and lefn >= 1.5):
+		fn1.write(content)
+		fall.write("2"+"\t"+content)
+	if (rign >= 1.5 and lefn >= 1.5):
+		fnn.write(content)
+		fall.write("3"+"\t"+content)
+fall.close()
+f.close()
+f11.close()
+f1n.close()
+fn1.close()
+fnn.close()

data/kg/FB15K-237N/relation2id.txt

@@ -0,0 +1,238 @@
+237
+/tv/tv_writer/tv_programs./tv/tv_program_writer_relationship/tv_program	0
+/award/award_nominee/award_nominations./award/award_nomination/award_nominee	1
+/film/film/release_date_s./film/film_regional_release_date/film_release_region	2
+/award/award_nominee/award_nominations./award/award_nomination/award	3
+/people/person/profession	4
+/film/actor/film./film/performance/film	5
+/award/award_category/nominees./award/award_nomination/nominated_for	6
+/award/award_winner/awards_won./award/award_honor/award_winner	7
+/film/film/genre	8
+/award/award_nominee/award_nominations./award/award_nomination/nominated_for	9
+/music/genre/artists	10
+/award/award_category/winners./award/award_honor/award_winner	11
+/film/film/other_crew./film/film_crew_gig/film_crew_role	12
+/location/location/contains	13
+/people/person/nationality	14
+/music/performance_role/track_performances./music/track_contribution/role	15
+/people/person/places_lived./people/place_lived/location	16
+/people/person/gender	17
+/common/topic/webpage./common/webpage/category	18
+/sports/sports_position/players./sports/sports_team_roster/team	19
+/award/award_winning_work/awards_won./award/award_honor/award	20
+/award/award_winning_work/awards_won./award/award_honor/award_winner	21
+/people/person/spouse_s./people/marriage/type_of_union	22
+/award/award_category/winners./award/award_honor/ceremony	23
+/award/award_ceremony/awards_presented./award/award_honor/award_winner	24
+/media_common/netflix_genre/titles	25
+/music/performance_role/regular_performances./music/group_membership/role	26
+/education/educational_institution/students_graduates./education/education/student	27
+/education/educational_institution/students_graduates./education/education/major_field_of_study	28
+/film/film/language	29
+/people/person/place_of_birth	30
+/film/film/country	31
+/film/film_distributor/films_distributed./film/film_film_distributor_relationship/film	32
+/soccer/football_team/current_roster./soccer/football_roster_position/position	33
+/soccer/football_team/current_roster./sports/sports_team_roster/position	34
+/education/educational_degree/people_with_this_degree./education/education/institution	35
+/music/record_label/artist	36
+/olympics/olympic_sport/athletes./olympics/olympic_athlete_affiliation/country	37
+/people/ethnicity/people	38
+/location/location/adjoin_s./location/adjoining_relationship/adjoins	39
+/music/instrument/instrumentalists	40
+/influence/influence_node/influenced_by	41
+/music/artist/track_contributions./music/track_contribution/role	42
+/film/film/production_companies	43
+/base/popstra/celebrity/friendship./base/popstra/friendship/participant	44
+/film/film/release_date_s./film/film_regional_release_date/film_release_distribution_medium	45
+/base/popstra/celebrity/dated./base/popstra/dated/participant	46
+/music/performance_role/regular_performances./music/group_membership/group	47
+/film/film/produced_by	48
+/tv/tv_program/regular_cast./tv/regular_tv_appearance/actor	49
+/film/film/estimated_budget./measurement_unit/dated_money_value/currency	50
+/olympics/olympic_participating_country/medals_won./olympics/olympic_medal_honor/olympics	51
+/location/location/time_zones	52
+/people/person/religion	53
+/government/legislative_session/members./government/government_position_held/district_represented	54
+/film/film/music	55
+/tv/tv_program/genre	56
+/film/film/featured_film_locations	57
+/food/food/nutrients./food/nutrition_fact/nutrient	58
+/award/award_ceremony/awards_presented./award/award_honor/honored_for	59
+/film/director/film	60
+/education/educational_institution/colors	61
+/organization/organization/headquarters./location/mailing_address/citytown	62
+/government/legislative_session/members./government/government_position_held/legislative_sessions	63
+/organization/organization_member/member_of./organization/organization_membership/organization	64
+/location/hud_foreclosure_area/estimated_number_of_mortgages./measurement_unit/dated_integer/source	65
+/film/film/written_by	66
+/people/person/languages	67
+/government/government_office_category/officeholders./government/government_position_held/jurisdiction_of_office	68
+/olympics/olympic_participating_country/athletes./olympics/olympic_athlete_affiliation/olympics	69
+/organization/role/leaders./organization/leadership/organization	70
+/music/group_member/membership./music/group_membership/role	71
+/military/military_combatant/military_conflicts./military/military_combatant_group/combatants	72
+/people/cause_of_death/people	73
+/business/job_title/people_with_this_title./business/employment_tenure/company	74
+/education/educational_institution/school_type	75
+/organization/organization/headquarters./location/mailing_address/state_province_region	76
+/award/award_nominated_work/award_nominations./award/award_nomination/nominated_for	77
+/people/deceased_person/place_of_death	78
+/sports/sports_team/colors	79
+/sports/professional_sports_team/draft_picks./sports/sports_league_draft_pick/school	80
+/music/genre/parent_genre	81
+/sports/pro_athlete/teams./sports/sports_team_roster/team	82
+/olympics/olympic_games/sports	83
+/film/film/executive_produced_by	84
+/sports/sports_team/roster./american_football/football_historical_roster_position/position_s	85
+/base/biblioness/bibs_location/country	86
+/sports/sports_team/roster./american_football/football_roster_position/position	87
+/film/film_subject/films	88
+/location/statistical_region/religions./location/religion_percentage/religion	89
+/user/jg/default_domain/olympic_games/sports	90
+/base/aareas/schema/administrative_area/administrative_parent	91
+/american_football/football_team/current_roster./sports/sports_team_roster/position	92
+/music/artist/origin	93
+/soccer/football_player/current_team./sports/sports_team_roster/team	94
+/travel/travel_destination/climate./travel/travel_destination_monthly_climate/month	95
+/education/educational_institution/campuses	96
+/education/educational_institution_campus/educational_institution	97
+/music/performance_role/guest_performances./music/recording_contribution/performance_role	98
+/education/educational_degree/people_with_this_degree./education/education/major_field_of_study	99
+/olympics/olympic_games/participating_countries	100
+/education/university/domestic_tuition./measurement_unit/dated_money_value/currency	101
+/base/schemastaging/person_extra/net_worth./measurement_unit/dated_money_value/currency	102
+/award/award_winning_work/awards_won./award/award_honor/honored_for	103
+/location/country/second_level_divisions	104
+/location/hud_county_place/place	105
+/organization/endowed_organization/endowment./measurement_unit/dated_money_value/currency	106
+/base/popstra/celebrity/canoodled./base/popstra/canoodled/participant	107
+/sports/professional_sports_team/draft_picks./sports/sports_league_draft_pick/draft	108
+/people/person/spouse_s./people/marriage/spouse	109
+/military/military_conflict/combatants./military/military_combatant_group/combatants	110
+/sports/sports_team/sport	111
+/people/marriage_union_type/unions_of_this_type./people/marriage/location_of_ceremony	112
+/tv/tv_producer/programs_produced./tv/tv_producer_term/program	113
+/user/tsegaran/random/taxonomy_subject/entry./user/tsegaran/random/taxonomy_entry/taxonomy	114
+/film/film/story_by	115
+/location/administrative_division/country	116
+/film/film/other_crew./film/film_crew_gig/crewmember	117
+/olympics/olympic_sport/athletes./olympics/olympic_athlete_affiliation/olympics	118
+/location/statistical_region/rent50_2./measurement_unit/dated_money_value/currency	119
+/time/event/locations	120
+/education/university/local_tuition./measurement_unit/dated_money_value/currency	121
+/base/marchmadness/ncaa_basketball_tournament/seeds./base/marchmadness/ncaa_tournament_seed/team	122
+/base/popstra/location/vacationers./base/popstra/vacation_choice/vacationer	123
+/film/film/film_format	124
+/base/schemastaging/organization_extra/phone_number./base/schemastaging/phone_sandbox/service_location	125
+/education/field_of_study/students_majoring./education/education/major_field_of_study	126
+/film/film/cinematography	127
+/language/human_language/countries_spoken_in	128
+/award/ranked_item/appears_in_ranked_lists./award/ranking/list	129
+/sports/sports_team_location/teams	130
+/business/business_operation/industry	131
+/people/person/employment_history./business/employment_tenure/company	132
+/location/hud_county_place/county	133
+/tv/tv_network/programs./tv/tv_network_duration/program	134
+/base/biblioness/bibs_location/state	135
+/location/country/form_of_government	136
+/location/capital_of_administrative_division/capital_of./location/administrative_division_capital_relationship/administrative_division	137
+/film/film/distributors./film/film_film_distributor_relationship/film_distribution_medium	138
+/base/culturalevent/event/entity_involved	139
+/sports/sports_league_draft/picks./sports/sports_league_draft_pick/school	140
+/tv/tv_program/country_of_origin	141
+/film/film/film_festivals	142
+/education/educational_degree/people_with_this_degree./education/education/student	143
+/education/field_of_study/students_majoring./education/education/student	144
+/olympics/olympic_participating_country/medals_won./olympics/olympic_medal_honor/medal	145
+/tv/tv_program/languages	146
+/people/person/spouse_s./people/marriage/location_of_ceremony	147
+/celebrities/celebrity/celebrity_friends./celebrities/friendship/friend	148
+/base/x2010fifaworldcupsouthafrica/world_cup_squad/current_world_cup_squad./base/x2010fifaworldcupsouthafrica/current_world_cup_squad/current_club	149
+/film/film/release_date_s./film/film_regional_release_date/film_regional_debut_venue	150
+/celebrities/celebrity/sexual_relationships./celebrities/romantic_relationship/celebrity	151
+/baseball/baseball_team/team_stats./baseball/baseball_team_stats/season	152
+/tv/tv_producer/programs_produced./tv/tv_producer_term/producer_type	153
+/location/country/official_language	154
+/location/statistical_region/gdp_nominal./measurement_unit/dated_money_value/currency	155
+/music/group_member/membership./music/group_membership/group	156
+/music/artist/contribution./music/recording_contribution/performance_role	157
+/film/film/personal_appearances./film/personal_film_appearance/person	158
+/government/politician/government_positions_held./government/government_position_held/legislative_sessions	159
+/business/business_operation/revenue./measurement_unit/dated_money_value/currency	160
+/base/schemastaging/organization_extra/phone_number./base/schemastaging/phone_sandbox/service_language	161
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+/business/business_operation/operating_income./measurement_unit/dated_money_value/currency	163
+/film/film/costume_design_by	164
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+/people/ethnicity/languages_spoken	166
+/organization/organization/child./organization/organization_relationship/child	167
+/location/statistical_region/gdp_nominal_per_capita./measurement_unit/dated_money_value/currency	168
+/film/film/runtime./film/film_cut/film_release_region	169
+/sports/sports_team/roster./baseball/baseball_roster_position/position	170
+/organization/organization/headquarters./location/mailing_address/country	171
+/location/us_county/county_seat	172
+/business/business_operation/assets./measurement_unit/dated_money_value/currency	173
+/film/actor/film./film/performance/special_performance_type	174
+/film/film/prequel	175
+/user/ktrueman/default_domain/international_organization/member_states	176
+/film/film/edited_by	177
+/sports/sports_team/roster./basketball/basketball_roster_position/position	178
+/location/statistical_region/places_exported_to./location/imports_and_exports/exported_to	179
+/influence/influence_node/peers./influence/peer_relationship/peers	180
+/medicine/disease/risk_factors	181
+/sports/sports_league/teams./sports/sports_league_participation/team	182
+/location/statistical_region/gdp_real./measurement_unit/adjusted_money_value/adjustment_currency	183
+/film/film/film_production_design_by	184
+/film/film/distributors./film/film_film_distributor_relationship/region	185
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+/award/award_category/category_of	191
+/travel/travel_destination/how_to_get_here./travel/transportation/mode_of_transportation	192
+/tv/tv_program/program_creator	193
+/location/country/capital	194
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+/organization/organization_founder/organizations_founded	200
+/location/location/partially_contains	201
+/people/person/sibling_s./people/sibling_relationship/sibling	202
+/education/university/fraternities_and_sororities	203
+/sports/sport/pro_athletes./sports/pro_sports_played/athlete	204
+/base/locations/continents/countries_within	205
+/organization/non_profit_organization/registered_with./organization/non_profit_registration/registering_agency	206
+/sports/sports_position/players./sports/sports_team_roster/position	207
+/people/ethnicity/geographic_distribution	208
+/tv/tv_program/tv_producer./tv/tv_producer_term/producer_type	209
+/medicine/disease/notable_people_with_this_condition	210
+/ice_hockey/hockey_team/current_roster./sports/sports_team_roster/position	211
+/base/americancomedy/celebrity_impressionist/celebrities_impersonated	212
+/education/university/international_tuition./measurement_unit/dated_money_value/currency	213
+/government/politician/government_positions_held./government/government_position_held/basic_title	214
+/film/film/dubbing_performances./film/dubbing_performance/actor	215
+/film/film_set_designer/film_sets_designed	216
+/film/actor/dubbing_performances./film/dubbing_performance/language	217
+/time/event/instance_of_recurring_event	218
+/base/localfood/seasonal_month/produce_available./base/localfood/produce_availability/seasonal_months	219
+/government/political_party/politicians_in_this_party./government/political_party_tenure/politician	220
+/government/politician/government_positions_held./government/government_position_held/jurisdiction_of_office	221
+/organization/organization/place_founded	222
+/tv/tv_personality/tv_regular_appearances./tv/tv_regular_personal_appearance/program	223
+/sports/sports_position/players./american_football/football_historical_roster_position/position_s	224
+/people/profession/specialization_of	225
+/broadcast/content/artist	226
+/olympics/olympic_games/medals_awarded./olympics/olympic_medal_honor/medal	227
+/government/governmental_body/members./government/government_position_held/legislative_sessions	228
+/film/film/film_art_direction_by	229
+/user/alexander/philosophy/philosopher/interests	230
+/base/saturdaynightlive/snl_cast_member/seasons./base/saturdaynightlive/snl_season_tenure/cast_members	231
+/music/instrument/family	232
+/dataworld/gardening_hint/split_to	233
+/film/special_film_performance_type/film_performance_type./film/performance/film	234
+/tv/non_character_role/tv_regular_personal_appearances./tv/tv_regular_personal_appearance/person	235
+/film/person_or_entity_appearing_in_film/films./film/personal_film_appearance/type_of_appearance	236

data/kg/UMLS/1-1.txt

@@ -0,0 +1 @@
+0

data/kg/UMLS/1-n.txt

@@ -0,0 +1,4 @@
+3
+75 5 25
+75 113 25
+10 57 25

data/kg/UMLS/entity2id.txt

@@ -0,0 +1,136 @@
+135
+idea_or_concept	0
+virus	1
+spatial_concept	2
+human_caused_phenomenon_or_process	3
+human	4
+organ_or_tissue_function	5
+daily_or_recreational_activity	6
+steroid	7
+biomedical_or_dental_material	8
+vertebrate	9
+immunologic_factor	10
+inorganic_chemical	11
+invertebrate	12
+embryonic_structure	13
+functional_concept	14
+amino_acid_peptide_or_protein	15
+fish	16
+reptile	17
+physical_object	18
+disease_or_syndrome	19
+biologically_active_substance	20
+physiologic_function	21
+population_group	22
+group	23
+body_space_or_junction	24
+bird	25
+qualitative_concept	26
+bacterium	27
+cell_function	28
+enzyme	29
+organophosphorus_compound	30
+nucleic_acid_nucleoside_or_nucleotide	31
+cell	32
+language	33
+antibiotic	34
+indicator_reagent_or_diagnostic_aid	35
+fungus	36
+chemical_viewed_functionally	37
+rickettsia_or_chlamydia	38
+patient_or_disabled_group	39
+professional_society	40
+health_care_related_organization	41
+clinical_attribute	42
+biomedical_occupation_or_discipline	43
+temporal_concept	44
+phenomenon_or_process	45
+family_group	46
+chemical_viewed_structurally	47
+regulation_or_law	48
+acquired_abnormality	49
+experimental_model_of_disease	50
+professional_or_occupational_group	51
+injury_or_poisoning	52
+receptor	53
+drug_delivery_device	54
+hazardous_or_poisonous_substance	55
+organism	56
+neoplastic_process	57
+mammal	58
+molecular_function	59
+lipid	60
+group_attribute	61
+nucleotide_sequence	62
+biologic_function	63
+chemical	64
+cell_component	65
+intellectual_product	66
+manufactured_object	67
+classification	68
+geographic_area	69
+vitamin	70
+gene_or_genome	71
+self_help_or_relief_organization	72
+pathologic_function	73
+amphibian	74
+laboratory_or_test_result	75
+organism_attribute	76
+cell_or_molecular_dysfunction	77
+therapeutic_or_preventive_procedure	78
+sign_or_symptom	79
+occupational_activity	80
+anatomical_abnormality	81
+hormone	82
+fully_formed_anatomical_structure	83
+educational_activity	84
+quantitative_concept	85
+tissue	86
+organism_function	87
+social_behavior	88
+mental_or_behavioral_dysfunction	89
+governmental_or_regulatory_activity	90
+molecular_biology_research_technique	91
+occupation_or_discipline	92
+conceptual_entity	93
+body_location_or_region	94
+pharmacologic_substance	95
+clinical_drug	96
+food	97
+substance	98
+genetic_function	99
+congenital_abnormality	100
+medical_device	101
+carbohydrate	102
+health_care_activity	103
+eicosanoid	104
+element_ion_or_isotope	105
+diagnostic_procedure	106
+entity	107
+event	108
+laboratory_procedure	109
+environmental_effect_of_humans	110
+body_part_organ_or_organ_component	111
+molecular_sequence	112
+mental_process	113
+research_device	114
+alga	115
+natural_phenomenon_or_process	116
+anatomical_structure	117
+animal	118
+body_system	119
+behavior	120
+carbohydrate_sequence	121
+archaeon	122
+research_activity	123
+organization	124
+individual_behavior	125
+organic_chemical	126
+finding	127
+age_group	128
+activity	129
+machine_activity	130
+plant	131
+body_substance	132
+amino_acid_sequence	133
+neuroreactive_substance_or_biogenic_amine	134

data/kg/UMLS/n-1.txt

@@ -0,0 +1,6 @@
+5
+30 96 22
+47 96 22
+65 119 10
+82 96 22
+55 96 22

data/kg/UMLS/n-n.py

@@ -0,0 +1,154 @@
+lef = {}
+rig = {}
+rellef = {}
+relrig = {}
+
+triple = open("train2id.txt", "r")
+valid = open("valid2id.txt", "r")
+test = open("test2id.txt", "r")
+
+tot = (int)(triple.readline())
+for i in range(tot):
+	content = triple.readline()
+	h,t,r = content.strip().split()
+	if not (h,r) in lef:
+		lef[(h,r)] = []
+	if not (r,t) in rig:
+		rig[(r,t)] = []
+	lef[(h,r)].append(t)
+	rig[(r,t)].append(h)
+	if not r in rellef:
+		rellef[r] = {}
+	if not r in relrig:
+		relrig[r] = {}
+	rellef[r][h] = 1
+	relrig[r][t] = 1
+
+tot = (int)(valid.readline())
+for i in range(tot):
+	content = valid.readline()
+	h,t,r = content.strip().split()
+	if not (h,r) in lef:
+		lef[(h,r)] = []
+	if not (r,t) in rig:
+		rig[(r,t)] = []
+	lef[(h,r)].append(t)
+	rig[(r,t)].append(h)
+	if not r in rellef:
+		rellef[r] = {}
+	if not r in relrig:
+		relrig[r] = {}
+	rellef[r][h] = 1
+	relrig[r][t] = 1
+
+tot = (int)(test.readline())
+for i in range(tot):
+	content = test.readline()
+	h,t,r = content.strip().split()
+	if not (h,r) in lef:
+		lef[(h,r)] = []
+	if not (r,t) in rig:
+		rig[(r,t)] = []
+	lef[(h,r)].append(t)
+	rig[(r,t)].append(h)
+	if not r in rellef:
+		rellef[r] = {}
+	if not r in relrig:
+		relrig[r] = {}
+	rellef[r][h] = 1
+	relrig[r][t] = 1
+
+test.close()
+valid.close()
+triple.close()
+
+f = open("type_constrain.txt", "w")
+f.write("%d\n"%(len(rellef)))
+for i in rellef:
+	f.write("%s\t%d"%(i,len(rellef[i])))
+	for j in rellef[i]:
+		f.write("\t%s"%(j))
+	f.write("\n")
+	f.write("%s\t%d"%(i,len(relrig[i])))
+	for j in relrig[i]:
+		f.write("\t%s"%(j))
+	f.write("\n")
+f.close()
+
+rellef = {}
+totlef = {}
+relrig = {}
+totrig = {}
+# lef: (h, r)
+# rig: (r, t)
+for i in lef:
+	if not i[1] in rellef:
+		rellef[i[1]] = 0
+		totlef[i[1]] = 0
+	rellef[i[1]] += len(lef[i])
+	totlef[i[1]] += 1.0
+
+for i in rig:
+	if not i[0] in relrig:
+		relrig[i[0]] = 0
+		totrig[i[0]] = 0
+	relrig[i[0]] += len(rig[i])
+	totrig[i[0]] += 1.0
+
+s11=0
+s1n=0
+sn1=0
+snn=0
+f = open("test2id.txt", "r")
+tot = (int)(f.readline())
+for i in range(tot):
+	content = f.readline()
+	h,t,r = content.strip().split()
+	rign = rellef[r] / totlef[r]
+	lefn = relrig[r] / totrig[r]
+	if (rign < 1.5 and lefn < 1.5):
+		s11+=1
+	if (rign >= 1.5 and lefn < 1.5):
+		s1n+=1
+	if (rign < 1.5 and lefn >= 1.5):
+		sn1+=1
+	if (rign >= 1.5 and lefn >= 1.5):
+		snn+=1
+f.close()
+
+
+f = open("test2id.txt", "r")
+f11 = open("1-1.txt", "w")
+f1n = open("1-n.txt", "w")
+fn1 = open("n-1.txt", "w")
+fnn = open("n-n.txt", "w")
+fall = open("test2id_all.txt", "w")
+tot = (int)(f.readline())
+fall.write("%d\n"%(tot))
+f11.write("%d\n"%(s11))
+f1n.write("%d\n"%(s1n))
+fn1.write("%d\n"%(sn1))
+fnn.write("%d\n"%(snn))
+for i in range(tot):
+	content = f.readline()
+	h,t,r = content.strip().split()
+	rign = rellef[r] / totlef[r]
+	lefn = relrig[r] / totrig[r]
+	if (rign < 1.5 and lefn < 1.5):
+		f11.write(content)
+		fall.write("0"+"\t"+content)
+	if (rign >= 1.5 and lefn < 1.5):
+		f1n.write(content)
+		fall.write("1"+"\t"+content)
+	if (rign < 1.5 and lefn >= 1.5):
+		fn1.write(content)
+		fall.write("2"+"\t"+content)
+	if (rign >= 1.5 and lefn >= 1.5):
+		fnn.write(content)
+		fall.write("3"+"\t"+content)
+fall.close()
+f.close()
+f11.close()
+f1n.close()
+fn1.close()
+fnn.close()

data/kg/UMLS/n-n.txt

@@ -0,0 +1,654 @@
+653
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data/kg/UMLS/relation2id.txt

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data/kg/UMLS/test2id.txt

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data/kg/UMLS/type_constrain.txt

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